* pin intel-oneapi version in CI (AMReX-Combustion#541)

* Bump Submodules/amrex from `8349789` to `00e6f75` (AMReX-Combustion#540)

Bumps [Submodules/amrex](https://github.com/AMReX-Codes/amrex) from `8349789` to `00e6f75`.
- [Release notes](https://github.com/AMReX-Codes/amrex/releases)
- [Commits](AMReX-Codes/amrex@8349789...00e6f75)

---
updated-dependencies:
- dependency-name: Submodules/amrex
  dependency-type: direct:production
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Bruce Perry <[email protected]>

* Make EOS functions templates to allow for CellData as an argument (AMReX-Combustion#536)

* template for celldata in EOS

* static asserts in templates

* templating for RY2 functions for all EOS

* Fix clang-tidy (AMReX-Combustion#535)

* fix unused variable

* free shared ptr for manfunc parm

---------

Co-authored-by: Marc T. Henry de Frahan <[email protected]>

* Unit conversions (AMReX-Combustion#539)

* Utilities and unit conversions

* Formatting

* 2 structs and renamed functions to avoid macros issue

* Templating and namespaces

* Added Utilities to Docs

* Overload instead of templating

* Fixed nested namespaces for clang-tidy error in PeleLMeX, removed Utilities.H from PelePhysics.H.wq (AMReX-Combustion#545)

* Update CI to ubuntu-24.04 (AMReX-Combustion#546)

---------

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: Bruce Perry <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Marc T. Henry de Frahan <[email protected]>
Co-authored-by: Dave Montgomery <[email protected]>
Co-authored-by: Jon Rood <[email protected]>

* ceptr: Added functionality for reading and converting PLOG reactions.

* Do formatting with black

* Run isort and flake8

* Latest upstream pull (#2)

* pin intel-oneapi version in CI (#541)

* Bump Submodules/amrex from `8349789` to `00e6f75` (#540)

Bumps [Submodules/amrex](https://github.com/AMReX-Codes/amrex) from `8349789` to `00e6f75`.
- [Release notes](https://github.com/AMReX-Codes/amrex/releases)
- [Commits](AMReX-Codes/amrex@8349789...00e6f75)

---
updated-dependencies:
- dependency-name: Submodules/amrex
  dependency-type: direct:production
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Bruce Perry <[email protected]>

* Make EOS functions templates to allow for CellData as an argument (#536)

* template for celldata in EOS

* static asserts in templates

* templating for RY2 functions for all EOS

* Fix clang-tidy (#535)

* fix unused variable

* free shared ptr for manfunc parm

---------

Co-authored-by: Marc T. Henry de Frahan <[email protected]>

* Unit conversions (#539)

* Utilities and unit conversions

* Formatting

* 2 structs and renamed functions to avoid macros issue

* Templating and namespaces

* Added Utilities to Docs

* Overload instead of templating

* Fixed nested namespaces for clang-tidy error in PeleLMeX, removed Utilities.H from PelePhysics.H.wq (#545)

* Update CI to ubuntu-24.04 (#546)

---------

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: Bruce Perry <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Marc T. Henry de Frahan <[email protected]>
Co-authored-by: Dave Montgomery <[email protected]>
Co-authored-by: Jon Rood <[email protected]>

* Adding example mechanism for PLOG evaluation

* Bump Submodules/amrex from `00e6f75` to `f27eb69` (#550)

Bumps [Submodules/amrex](https://github.com/AMReX-Codes/amrex) from `00e6f75` to `f27eb69`.
- [Release notes](https://github.com/AMReX-Codes/amrex/releases)
- [Commits](AMReX-Codes/amrex@00e6f75...f27eb69)

---
updated-dependencies:
- dependency-name: Submodules/amrex
  dependency-type: direct:production
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* speciesNames for Manifold EOS (#542)

* simplify templated functions in EOS.cpp

* rearrange template specializations in EOS.cpp so they are all in header; improve speciesNames function for manifold

* SYCL ifdef for manifold speciesnames

* pass host eosparm to reactors

* ignitionDelay: remove one invalid call for manifold eos

* fix dumb bug

* clang-tidy unused arguments

* ceptr: create pressure-specific folders for plog mechanism, move plog_pressure var into mechanism object

* ceptr: implement command line and list options to specify plog pressure

* ceptr: Add plog mech to list_mech

* ceptr: Copy Make.package to the plog subfolder

* add docs on plog mechanism conversion

* fix typo

fix another typo

---------

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: Thomas Howarth <[email protected]>
Co-authored-by: Bruce Perry <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Marc T. Henry de Frahan <[email protected]>
Co-authored-by: Dave Montgomery <[email protected]>
Co-authored-by: Jon Rood <[email protected]>